William & Mary
Close menu Resources for... William & Mary
Popular Topics
Suggested Results
News Events
Apply Visit Request Info
W&M menu close William & Mary
Information Technology
Services

Publications citing W&M HPC resources

 
2019
  1. Xiang Hu, Timo Hyart, Dmitry I. Pikulin, Enrico Rossi, “Geometric and conventional contribution to superfluid weight in twisted bilayer graphene”, Phys. Rev. Lett. 123, 237002 (2019).
  2. Wu, Qiong & Wong, Felix & Liu, Zhenming & Li, Yanhua & Kanade, Varun. (2019). Adaptive Reduced Rank Regression. 34th Conference on Neural Information Processing Systems (NeurIPS 2020), Vancouver, Canada.
  3. brahim, M. A., Liu, H., Kayiran, O., & Jog, A. (2019, September). Analyzing and Leveraging Remote-Core Bandwidth for Enhanced Performance in GPUs. 2019 28th International Conference on Parallel Architectures and Compilation Techniques (PACT). 2019 28th International Conference on Parallel Architectures and Compilation Techniques (PACT). https://doi.org/10.1109/pact.2019.00028
  4. M. A. Ibrahim, H. Liu, O. Kayiran and A. Jog, "Analyzing and Leveraging Remote-Core Bandwidth for Enhanced Performance in GPUs," 2019 28th International Conference on Parallel Architectures and Compilation Techniques (PACT), Seattle, WA, USA, 2019, pp. 258-271, doi: 10.1109/PACT.2019.00028.
  5. R. S. Sufian, J. Karpie, C. Egerer, K. Orginos, J. W. Qiu and D. G. Richards, "Pion Valence Quark Distribution from Matrix Element Calculated in Lattice QCD,” Phys. Rev. D 99, no. 7, 074507 (2019) [arXiv:1901.03921 [hep-lat]]. https://doi.org/10.1103/PhysRevD.99.074507
  6. Tarpley, D.R., C.K. Harris, C.T. Friedrichs, and C.R. Sherwood. 2019. Tidal variation in cohesive sediment distribution and sensitivity to flocculation and bed consolidation in an idealized, partially mixed estuary. Journal of Marine Science and Engineering (JMSE); 7: 334; doi:10.3390/jmse7100334.
  7. Zhang, Y., Gerdts, N., Ateljevich, E., and Nam, K. (2019) Simulating vegetation effects on flows in 3D using an unstructured grid model: model development and validation, Ocean Dynamics, https://doi.org/10.1007/s10236-019-01333-8.  
  8. Ye, F., Zhang, Y., He, R., Wang, Z., Wang, H.V., and Du, J. (2019) Third-order WENO transport scheme for simulating the baroclinic eddying ocean on an unstructured grid, Ocean Modelling, 143, 101466. https://doi.org/10.1016/j.ocemod.2019.101466. 
  9. Du, J., Park, K., Shen, J., Zhang, Y. J., Yu, X., Ye, F., Wang, Z., and Rabalais, N. N. (2019) A hydrodynamic model for Galveston Bay and the shelf in the northern Gulf of Mexico, Ocean Sci., 15, 951-966, https://doi.org/10.5194/os-15-951-2019
  10. Harlev, A., Johnson, C. R., and Lim, D., The Doubly Stochastic Single Eigenvalue Problem: A Computational Approach, arXiv:1908.03647 (2019).
  11. Storch, L.S. and Day, S.L., Towards the prediction of critical transitions in spatially extended populations with cubical homology, Contemporary Mathematics, 736: 31-48 (2019).
  12. Wang, Haonan and Jog, Adwait, Exploiting Latency and Error Tolerance of GPGPU Applications for an Energy-Efficient DRAM, 2019 49th Annual IEEE/IFIP International Conference on Dependable Systems and Networks (DSN). https://doi.org/10.1109/DSN.2019.00046.
  13. Wang, Haonan, Ibrahim, Mohamed, Mittal, Sparsh, and Jog, Adwait, Address-stride Assisted Approximate Load Value Prediction in GPUs. Proceedings of the ACM International Conference on Supercomputing, http://doi.acm.org/10.1145/3330345.3330362.
  14. Rachel S. Anderson, Newton V. Nagirimadugu, and Christopher J. Abelt, Fluorescence Quenching of Carbonyl-Twisted 5-Acyl-1-dimethylaminonaphthalenes by Alcohols. ACS Omega Article ASAP, https://doi.org/10.1021/acsomega.9b01905. 
  15. John H. Boyle, ?Dino Martins, ?Paul M. Musili and ?Naomi E. Pierce, Population Genomics and Demographic Sampling of the Ant-Plant Vachellia drepanolobium and Its Symbiotic Ants From Sites Across Its Range in East Africa. Front. Ecol. Evol., 07 June 2019 https://doi.org/10.3389/fevo.2019.00206. 
  16. Mario Motta, James Shee, Shiwei Zhang and Garnet Kin-Lic Chan, Efficient Ab Initio Auxiliary-Field Quantum Monte Carlo Calculations in Gaussian Bases via Low-Rank Tensor Decomposition.  J. Chem. Theor. Comput. 15, 3510-3521 (2019). 
  17. Brandon Eskridge, Henry Krakauer, and Shiwei Zhang, Local Embedding and Effective Downfolding in the Auxiliary-Field Quantum Monte Carlo Method. J. Chem. Theor. Comput., (2019).  https://doi.org/10.1021/acs.jctc.8b01244.  
  18. Tyler Atkinson, Alexander W. Richter, and Nathaniel A.Throckmorton, The Zero Lower Bound and Estimation Accuracy. Journal of Monetary Economics, 0304-3932 (2019). https://doi.org/10.1016/j.jmoneco.2019.06.007. 
  19. Irby, I.D. and M.A.M. Friedrichs, Evaluating confidence in the impact of regulatory nutrient reduction on Chesapeake Bay water quality. Estuaries and Coasts, 16-32 (2019). https://doi.org/10.1007/s12237-018-0440-5. 
  20. Fennel, K., M. Gehlen, P. Grasseur, C. .W. Brown, S. Ciavatta, G. Cossarini, A. Crise, C.A. Edwards, D. Ford, M.A.M. Friedrichs, M. Gregoire, E. Jones, H. Kim, J. Lamouroux, R. Murtugudde, C. Perruche. Advancing Marine Biogeochemical and Ecosystem Reanalyses and Forecasts as Tools for Monitoring and Managing Ecosystem Health. Frontiers in Marine Science, 6, 1-9,(2019) https://doi.org/10.3389/fmars.2019.00089.
  21. Signorini, S.R., Mannino, A., Friedrichs, M.A.M., P. St-Laurent, J. Wilkin, A. Tabatabai, R.G. Najjar, E.E. Hofmann, F. Da, H. Tian, Y. Yao, 2019. Estuarine dissolved organic carbon flux from space: with application to Chesapeake and Delaware Bays. Journal of Geophysical Research: Oceans, 124, https://doi.org/10.1029/2018JC014646. 
  22. Yohanes S. Gani, Hadar Steinberg, and Enrico Rossi. Superconductivity in twisted graphene NbSe_2 heterostructures. Phys. Rev. B 99, 235404.
  23. M. White, M. Tufano, M. Martínez, M. Monperrus, and D. Poshyvanyk. Sorting and transforming program repair ingredients via deep learning code similarities. In Proceedings of the 26th IEEE International Conference on Software Analysis, Evolution and Reengineering, SANER ’19, p. 479-490.
  24. R. K. Rai, A. De Angelis, A. Greenwood, S. J. Opella, M. L. Cotten,Metal‐ion Binding to Host Defense Peptide Piscidin 3 Observed in Phospholipid Bilayers by Magic Angle Spinning Solid‐state NMR, ChemPhysChem 2019, 20, 295.
  25. Ruiqin Tian*, Junqiao Qiu*, Zhijia Zhao, Xu Liu, Bin Ren (* co-primary), Transforming Query Sequences for High-Throughput B+ Tree Processing on Many-core Processors, The 2019 International Symposium on Code Generation and Optimization (CGO), February 2019.
  26. Seth Goodman, Ariel BenYishay, Zhonghui Lv, Daniel Runfola, GeoQuery: Integrating HPC systems and public web-based geospatial data tools, Computers & Geosciences,
    Volume 122, (2019), Pages 103-112, https://doi.org/10.1016/j.cageo.2018.10.009
  27. Friedrichs, M.A.M., P. St-Laurent, Y. Xiao, E. Hofmann, K. Hyde, A. Mannino, R.G. Najjar, D. Narvaez, S.R. Signorini, H. Tian, J. Wilkin, Y. Yao, J. Xue, 2019. Ocean circulation causes strong variability in the Mid-Atlantic Bight nitrogen budget. Journal of Geophysical Research: Oceans, 123, https://doi:10.1029/2018JCO14424.
Oral/Poster Presentations:
  1. Grace Solini* and Margaret Saha, Transcriptomic analysis of Notch signaling perturbation, International Meeting of Research in Computational Molecular Biology (RECOMB) in May 2019 in Washington DC.
  2. Friedrichs, C. T., Turner, J. S. St-Laurent, P., & Friedrichs, M. A. M.Effects of shoreline erosion on Chesapeake Bay water clarity. Coastal and Estuarine Research Federation (CERF) conference in Mobile, AL in November 2019.
  3. Hinson, K.E., Friedrichs, M.A.M., Bhatt, G., Najjar, R.G., Herrmann, M., Tian, H., Yao, Y. (2019) Sensitivity of projected Chesapeake Bay hypoxia to climate model, downscaling method, and watershed model, Oral presentation at 2019 CERF Conference, Mobile, AL, 3-7 Nov.
2018
  1. Karpie, J., Orginos, K., Radyushkin, A. & Zafeiropoulos, S., Parton distribution functions on the lattice and in the continuum. EPJ Web Conf., 175 (2018) 06032 DOI: https://doi.org/10.1051/epjconf/201817506032
  2. Chang, E., Davoudi, Z., Detmold, W., Gambhir, A. S.,  Orginos, K., Savage, M. J., Shanahan, P. E.,  Wagman, M. L. & Winter, F., (NPLQCD Collaboration), Scalar, Axial, and Tensor Interactions of Light Nuclei from Lattice QCD. Phys. Rev. Lett. 120, 152002 (2018).
  3. Karpie, J., Orginos, K. & Zafeiropoulos, S. J.,  Moments of Ioffe time parton distribution functions from non-local matrix elements. High Energ. Phys. (2018) 2018: 178. https://doi.org/10.1007/JHEP11(2018)178
  4. Chi-Min Chiu, Ching-Jer Huanga, Li-Chung Wu, Yinglong Joseph Zhang, Laurence Zsu-Hsin Chuang, Yangming Fan, and Hao-Cheng Yu, Forecasting of oil-spill trajectories by using SCHISM and X-band radar. Marine Pollution Bulletin Vol 137, December 2018, Pages 566-581
  5. Yohanes S. Gani, D. S. L. Abergel, and Enrico Rossi, Electronic structure of graphene nanoribbons on hexagonal boron nitride, Phys. Rev. B 98, 205415 (2018).
  6. Adam Chiciak, Ettore Vitali, Hao Shi, and Shiwei Zhang, Magnetic orders in the hole-doped three-band Hubbard model: Spin spirals, nematicity, and ferromagnetic domain walls. Phys. Rev. B 97, 235127 (2018).
  7. Moriarty, J.M., C.K. Harris, M.A.M. Friedrichs, K. Fennel, K. Xu, 2018. Impact of seabed resuspension on oxygen and nitrogen dynamics in the northern Gulf of Mexico: a numerical modeling study. Journal of Geophysical Research: Oceans 123,
    7237-7263, doi:10.1029/2018JC013950
  8. Bever, A.J., M.A.M. Friedrichs, C.T. Friedrichs, M.E. Scully, 2018. Estimating hypoxic volume in the Chesapeake Bay using two continuous oxygen profiles. Journal of Geophysical Research: Oceans, 123, 6392-6407. doi:10.1029/2018JC014129
  9. Irby, I.D. and M.A.M. Friedrichs, Estuaries and Coasts, 2018. Evaluating confidence in the impact of regulatory nutrient reduction on Chesapeake Bay water quality. Estuaries and Coasts, 1-17, doi:10.1007/s12237-018-0440-5
  10. Allan, J., Priest, G.R., Zhang, Y.J. and Gabel, L. (2018) Maritime Tsunami Evacuation Guidelines for the Pacific Northwest Coast of Oregon, Natural Hazards. DOI 10.1007/s11069-018-3372-2
  11. Hongyuan Liu, Mohamed Ibrahim, Onur Kayiran, Sreepathi Pai, Adwait Jog,
    Architectural Support for Efficient Large-Scale Automata Processing,
    In the Proceedings of 51st International Symposium on
    Microarchitecture (MICRO), Fukuoka, Japan, October 2018.
  12. Bin Nie, Lishan Yang, Adwait Jog, Evgenia Smirni,
    Fault Site Pruning for Practical Reliability Analysis of GPGPU Applications,
    In the Proceedings of 51st International Symposium on
    Microarchitecture (MICRO), Fukuoka, Japan, October 2018.
  13. Buchanan, G. M., Parks, B. C., Donald, P. F., O’Donnell, B. F., Runfola, D., Swaddle, J.,  Tracewski, L., Butchart, S. (2018). The Local Impacts of World Bank Development Projects Near Sites of Conservation Significance. The Journal of Environment & Development, 27(3), 299–322. https://doi.org/10.1177/1070496518785943
  14. Jonas B. Bunte, Harsh Desai, Kanio Gbala, Bradley Parks, Daniel Miller Runfola,
    Natural resource sector FDI, government policy, and economic growth: Quasi-experimental evidence from Liberia, World Development, Volume 107, (2018), Pages 151-162, https://doi.org/10.1016/j.worlddev.2018.02.034
  15. Marty, R., Goodman, S., LeFew, M., Dolan, C., BenYishay, A., Runfola, D., Assessing the causal impact of Chinese aid on vegetative land cover in Burundi and Rwanda under conditions of spatial imprecision, Development Engineering (2018),  https://doi.org/10.1016/j.deveng.2018.11.001
  16. Zhen Peng, Alexander Powell, Bo Wu, Tekin Bicer, Bin Ren, GraphPhi: Efficient Parallel Graph Processing on Emerging Throughput-oriented Architectures, The 27th International Conference on Parallel Architectures and Compilation Techniques (PACT), November, 2018.
  17. Atkinson, Tyler & Richter, Alexander W. & Throckmorton, Nathaniel, 2018. The Accuracy of Linear and Nonlinear Estimation in the Presence of the Zero Lower Bound, Working Papers 1804, Federal Reserve Bank of Dallas.
  18.  Pownall, Mark E., Cutler, Ronald R., Saha, Margaret S., Transcriptome of Xenopus andrei, an octoploid frog, during embryonic development. Data in Brief, 19, 501-505, (2018). https://doi.org/10.1016/j.dib.2018.05.017
  19. Santos, B.S., Friedrichs, M.A.M., Rose, S., Barco, S.G., Kaplan, D.M. 2018. Likely locations of sea turtle stranding mortality using experimentally-calibrated, time and space-specific drift models. Biological Conservation 226:127-143, https://doi.org/10.1016/j.biocon.2018.06.029
  20. Najjar, R.G., M. Herrmann, R. Alexander, E.W. Boyer, D. Burdige, D. Butman, W-J Cai, E.A. Canuel, R.F. Chen, M.A.M. Friedrichs, R.A. Feagin, P. Griffith, A.L. Hinson, J.R. Holmquqist, X. Hu, W.M. Kemp, K.D. Kroeger, A. Mannino, S.L. McCallister, W.R. McGillis, M.R. Mulholland, C. Pilskaln, J. Salisbury, S. Signorini, P. St-Laurent, H. Tian, M. Tzortziou, P. Vlahos, Z.A. Wang, R.C. Zimmerman, 2018. Carbon budget of tidal wetlands, estuaries, and shelf waters of Eastern North America. Global Biogeochemical Cycles, 32, 389–416. https://doi.org/10.1002/2017GB005790.
  21. Irby, I. D., Friedrichs, M. A. M., Da, F., and Hinson, K. E. (2018). The competing impacts of climate change and nutrient reductions on dissolved oxygen in Chesapeake Bay. Biogeosciences, 15(9), 2649.
  22. Allan, J., Priest, G.R., Zhang, Y.J. and Gabel, L. (2018) Maritime Tsunami Evacuation Guidelines for the Pacific Northwest Coast of Oregon, Natural Hazards. DOI 10.1007/s11069-018-3372-2
  23. Ye, F., Zhang, Y., Wang, H., Friedrichs, M.A.M., Irby, I.D., Alteljevich, E., Valle-Levinson, A., Wang,Z., Huang, H., Shen, J., Du, J. (2018) A 3D unstructured-grid model for Chesapeake Bay: importance of bathymetry, Ocean Modelling, 127, 16-39.
  24. Liu, Z., Zhang, Y., Wang, H.V., Wang, Z., Ye, F., Huang, H., and Sisson, M. (2018) Impact of small-scale structures on estuarine circulation, Ocean Dynamics, 68(4), 509-533, https://doi.org/10.1007/s10236-018-1148-6.
  25. Du, J., Shen, J., Zhang, Y., Ye, F., Liu, Z., Wang, Z., Wang, Y., Yu, X., Sisson, M. and Wang, H. V. (2018). Tidal response to sea-level rise in different types of estuaries: The importance of length, bathymetry, and geometry. Geophysical Research Letters, 45. https://doi.org/10.1002/2017GL075963
  26. Da, F., M.A.M. Friedrichs, P. St-Laurent, Impacts of atmospheric nitrogen deposition and coastal nitrogen fluxes on oxygen concentrations in Chesapeake Bay, J. Geophys. Res. Oceans, 123, doi:10.1029/2018jc014009, (2018)/
  27. Kaufman, D. E., Friedrichs, M. A. M., Hemmings, J. C. P., and Smith Jr., W. O.: Assimilating bio-optical glider data during a phytoplankton bloom in the southern Ross Sea, Biogeosciences, 15, 73-90, https://doi.org/10.5194/bg-15-73-2018, (2018). 
  28. H. Wang, F. Luo, M. Ibrahim, O. Kayiran, A. Jog. Efficient and Fair Multi-programming in GPUs via Effective Bandwidth Management. Proceedings of the 24th IEEE Symposium on
    High-Performance Computer Architecture (HPCA), Vienna, Austria, http://adwaitjog.github.io/docs/pdf/pbs-hpca18.pdf, Feb 2018.
  29. G. Kadam, D. Zhang, A. Jog. RCoal: Mitigating GPU Timing Attack via Subwarp-based Randomized Coalescing Techniques.  Proceedings of 24th IEEE Symposium on High-Performance Computer Architecture (HPCA), Vienna, Austria, http://adwaitjog.github.io/docs/pdf/rcoal-hpca18.pdf, Feb 2018.
  30. Du, J., Shen, J., Zhang, Y. J., Ye, F., Liu, Z., Wang, Z., Wang, Y. P., Yu, X., Sisson, M., Wang, H. V. (2018). Tidal response to sea-level rise in different types of estuaries: The importance of length, bathymetry, and geometry. Geophysical Research Letters, 45. https://doi.org/10.1002/2017GL075963
  31. J. Hindes, I. B. Schwartz, and L. B. Shaw. Enhancement of large fluctuations to extinction in adaptive networks. Phys. Rev. E, 97, 012308 (2018).
  32. Santos, B.S., D.M. Kaplan, M.A.M. Friedrichs, S.G. Barco, K.L. Mansfield, J.P. Manning. 2018. Consequences of drift and carcass decomposition for estimating sea turtle mortality hotspots. Ecological Indicators 84:319-336. doi: 10.1016/j.ecolind.2017.08.064
  33. Jasmin C. Green, Faraz Rahman, Matthew A. Saxton and Kurt E. Williamson, Quantifying aquatic viral community change associated with stormwater runoff in a wet retention pond using metagenomic time series data. Aquatic Microbial Ecology, Vol. 81: 19–35, 2018. https://doi.org/10.3354/ame01856
  34. Huynh, Q.C., Beckensteiner, J., Carleton, L.M., Marcek, B.J., Nepal KC, V., Peterson, C.P., Wood, M.A., Hoenig, J.M. (2018). Comparative performance of three length-based mortality estimators. Marine and Coastal Fisheries Vol 10: 298-313. doi:10.1002/mcf2.10027
Poster Presentations:
  1. R. Cutler*, J. Kim*, T. Tseng*, M. Saha Comparative Homeolog Expression Variability and Cis-regulatory Analysis in the allotetraploid frog, Xenopus laevis. Genetics Society of America: International Xenopus Conference, Seattle, August, 2018.
  2. Mark Pownall*, Andrew Halleran*, Ronald Cutler*, Caroline Golino*, Margaret Saha. Comparative Analysis of the Response to Notch Signaling Perturbation across Xenopus Species during Embryonic Development. Genetics Society of America: International Xenopus Conference, Seattle, August, 2018.
  3. Turner, J. S., Friedrichs, M. A. M., Friedrichs, C. T., & St-Laurent, P.Effects of Shoreline Erosion and Organic Matter Sinking Rates on Chesapeake Bay Water Clarity. American Geophysical Union (AGU) meeting in Washington, DC in December 2018.
2017
  1. Orginos, K., Radyushkin, A., Karpie, J. & Zafeiropoulos, S.  Lattice QCD exploration of parton pseudo-distribution functions. Phys. Rev. D 96, 094503 (2017).
  2. St-Laurent, P., M.A.M Friedrichs, R.G. Najjar, D.K. Martins, M. Herrmann, S.K. Miller and J. Wilkin. Impacts of atmospheric nitrogen deposition on surface waters of the western North Atlantic mitigated by multiple feedbacks J. Geophys. Res. Oceans, vol. 122, doi:10.1002/2017jc013072, VIMS Contribution No. 3665.
  3. BenYishay, A., Heuser, S., Runfola, D.M., Trichler, R. 2017. Indigenous land rights and deforestation: Evidence from the Brazilian Amazon. Journal of Environmental Economics and Management. https://doi.org/10.1016/j.jeem.2017.07.008
  4. Zhao, J., Runfola, D., Kemper, P., 2017. Quantifying Heterogeneous Causal Treatment Effects in World Bank Development Finance Projects. Data Mining and Knowledge Discovery (ECML PKDD). http://ecmlpkdd2017.ijs.si/papers/paperID507.pdf
  5. Zhao, J., Runfola, D., Kemper, P. 2017. Simulation Study in Quantifying Heterogeneous Causal Effects. WSC Proceedings. Available online at:                                                http://informs-sim.org/wsc17papers/.
  6. Runfola, D., BenYishay,  A., Tanner, J., Buchanan, G., Nagol, J.,  Leu, M., Goodman, M.,Trichler, R., and Marty, R. 2017. A Top-Down Approach to Estimating Spatially Heterogeneous Impacts of Development Aid on Vegetative Carbon Sequestration. Sustainability 9(3), 409. doi:10.3390/su9030409. http://www.mdpi.com/2071-1050/9/3/409
  7. Tan, J.A., Garakyaraghi, S., Tagami, K.A., Frano, K.A., Crockett, H.M., Ogata, A.F., Patterson, J.D. and Wustholz, K.L. Contributions from Excited-State Proton and Electron Transfer to the Blinking and Photobleaching Dynamics of Alizarin and Purpurin. J. Phys. Chem. C. 2017, 121 (1), 97 - 106. Article ASAP DOI: 10.1021/acs.jpcc.6b09818
  8. Richter, A.W., Throckmorton, N.A. A New Way to Quantify the Effect of Uncertainty. Federal Reserve Bank of Dallas Working Paper 1705. May 2017.
  9. Moriarty, J. M., Harris, C. K., Rabouille, C., Fennel, K., Friedrichs, M.A.M, and Xu, K. (2017). The Roles of Resuspension, Diffusion and Biogeochemical Processes on Oxygen Dynamics Offshore of the Rhone River, France: A Numerical Modeling Study. Biogeosciences, 14, p. 1919-1946.
  10. Kaufman, D. E., M. A. M. Friedrichs, W. O. Smith Jr., E. E. Hofmann, M. S. Dinniman, and J. C. P. Hemmings (2017), Climate change impacts on southern Ross Sea phytoplankton composition, productivity, and export. J. Geophys. Res. Oceans, 122, 2339–2359, doi:10.1002/2016JC012514.
  11. Kaufman, D.E. (2017). Using high-resolution glider data and biogeochemical modeling to investigate phytoplankton variability in the Ross Sea. Doctoral thesis. Virginia Institute of Marine Science, William & Mary.
  12. M. Motta and S. Zhang, Computation of Ground-State Properties in Molecular Systems: Back-Propagation with Auxiliary-Field Quantum Monte Carlo. J. Chem. Theory Comput., 2017, 13 (11), pp 5367–5378. doi: 10.1021/acs.jctc.7b00730.
  13. Mario Motta, David M. Ceperley, Garnet Kin-Lic Chan, John A. Gomez, Emanuel Gull, Sheng Guo, Carlos A. Jiménez-Hoyos, Tran Nguyen Lan, Jia Li, Fengjie Ma, Andrew J. Millis, Nikolay V. Prokof’ev, Ushnish Ray, Gustavo E. Scuseria, Sandro Sorella, Edwin M. Stoudenmire, Qiming Sun, Igor S. Tupitsyn, Steven R. White, Dominika Zgid, and Shiwei Zhang (Simons Collaboration on the Many-Electron Problem).  Towards the Solution of the Many-Electron Problem in Real Materials: Equation of State of the Hydrogen Chain with State-of-the-Art Many-Body Methods. Phys. Rev. X 7, 031059 (2017).
  14. Peter Rosenberg, Hao Shi, and Shiwei Zhang, Ultracold Atoms in a Square Lattice with Spin-Orbit Coupling: Charge Order, Superfluidity, and Topological Signatures. Phys. Rev. Lett. 119, 265301 (2017).

  15. Ettore Vitai, Hao Shi, Mingpu Qin, and Shiwei Zhang. Response Functions for the Two-Dimensional Ultracold Fermi Gas: Dynamical BCS Theory and Beyond.  J Low Temp Phys (2017) 189: 312. https://doi.org/10.1007/s10909-017-1805-z

  16. T. J. Huffman, C. Hendriks, E. J. Walter, Joonseok Yoon, Honglyoul Ju, R. Smith, G. L. Carr, H. Krakauer, and M. M. Qazilbash. Insulating phases of vanadium dioxide are Mott-Hubbard insulators. Phys. Rev. B 95, 075125 (2017).
  17. Fengjie Ma, Shiwei Zhang, and Henry Krakauer. Auxiliary-field quantum Monte Carlo calculations with multiple-projector pseudopotentials. Phys. Rev. B 95, 165103 (2017).
  18. Priest, G.R., Witter, R.C., Zhang, Y., Goldfinger, C., and Wang, K. (2017) New constraints on coseismic slip during southern Cascadia subduction zone earthquakes over the past 4600 years implied by tsunami deposits and marine turbidites, Natural Hazards. DOI: 10.1007/s11069-017-2864-9
  19. Yu, H-S., Zhang, Y., Yu, J.C.S., Terng, C., Sun, W., Ye, F., Wang, H.V., Wang, Z., and Huang, H. (2017) Simulating multi-scale oceanic processes around Taiwan on unstructured grids, Ocean Modelling, 112, 72-93. http://dx.doi.org/10.1016/j.ocemod.2017.09.007
  20. Peter Rosenberg, Hao Shi, Shiwei Zhang, Accurate computations of Rashba spin-orbit coupling in interacting systems: From the Fermi gas to real materials, Journal of Physics and Chemistry of Solids, in press, https://doi.org/10.1016/j.jpcs.2017.12.026
  21. Irby, I.D., M.A.M. Friedrichs, F. Da and K. Hinson, 2017. The competing impacts of climate change and nutrient reductions on dissolved oxygen in Chesapeake Bay. Biogeosciences Discussions, in review. doi: 10.5194/bg-2017-416.
  22. ​​Luettich, R.A., L.D. Wright, C.R. Nichols, R. Baltes, M.A.M. Friedrichs, A. Kurapov, A.J. van der Westhuysen, K. Fennel and E. Howlett, 2017. A U.S Integrated Ocean Observing System Coastal and Ocean Modeling Testbed to improve understanding and operational forecasts of extreme events and chronic environmental conditions, https://doi.org/10.1029/2017EO078243
  23. Moriarty, Julia M. (2017). The Role of Seabed Resuspension on Oxygen and Nutrient Dynamics in Coastal Systems: A Numerical Modeling Study. Ph.D. Dissertation submitted to the Virginia Institute of Marine Science, William & Mary.
  24. Mingpu Qin, Hao Shi, and Shiwei Zhang, Numerical results on the short-range spin correlation functions in the ground state of the two-dimensional Hubbard model. Phys Rev B 96, 075156 (2017) https://doi.org/10.1103/PhysRevB.96.075156
  25. Ettore Vitali, Hao Shi, Mingpu Qin, and Shiwei Zhang, Visualizing the BEC-BCS crossover in a two-dimensional Fermi gas: Pairing gaps and dynamical response functions from ab initio computations. Phys Rev A 96, 061601(R) (2017). https://doi.org/10.1103/PhysRevA.96.061601
  26. Bo-Xiao Zheng, Chia-Min Chung, Philippe Corboz, Georg Ehlers, Ming-Pu Qin, Reinhard M. Noack, Hao Shi, Steven R. White, Shiwei Zhang, Garnet Kin-Lic Chan, Stripe order in the underdoped region of the two-dimensional Hubbard model. Science,  Vol. 358, Issue 6367, pp. 1155-1160 (2017). https://doi.org/10.1126/science.aam7127
  27. Santos, B.S. 2017. Integrating Empirical Data and Ocean Drift Models to Better Understand Sea Turtle Strandings in Virginia. Master's thesis. Virginia Institute of Marine Science, William & Mary.
  28. Huynh, Q.C., Gedamke, T., Porch, C.E., Hoenig, J.M., Walter, J.F., Bryan, M., Brodziak, J. (2017). Estimating total mortality rates of mutton snapper from mean lengths and aggregate catch rates in a non-equilibrium situation. Transactions of the American Fisheries Society Vol. 146: 803-815. doi:10.1080/00028487.2017.1308881
  29. Arfken, A., B. Song, J. Bowman, and M. Piehler (2017). Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach. PLOS One 12: e0185071.
Poster Presentations:
  1. Turner, J. S., Friedrichs, C. T., Friedrichs, M. A. M., & Da, F. It’s in the wash (load): Impacts on light attenuation (Kd) in a land-estuarine ocean biogeochemical model for Chesapeake Bay. Coastal and Estuarine Research Federation (CERF) conference in Providence, RI in November 2017.

2016

  1. Zhang, Y., Ye, F., Stanev, E.V., Grashorn, S. (2016). Seamless cross-scale modeling with SCHISM, Ocean Modelling, 102, 64-81. doi:10.1016/j.ocemod.2016.05.002
  2. Zhang, Y., Priest, G.R., Allan, J., Stimely, L. (in press) Benchmarking an unstructured-grid model for tsunami current modeling, Pure and Applied Geophysics.
  3. Zhang, Y., Stanev, E.V. and S. Grashorn (2016) Unstructured-grid model for the North Sea and Baltic Sea: validation against observations, Ocean Modelling, 97, 91-108.
  4. Najjar, R., P. Sedwick, M. Mulholland, M.A.M. Friedrichs, A. Thompson, D. Martins, P. Bernhardi, M. Herrmann, L. Price, B. Sohst, C. Sookhdeo, P. St-Laurent, B. Widner. Deposition of atmospheric nitrogen to coastal ecosystems (DANCE): A study in seasonally oligotrophic waters off the eastern U.S. AGU-ASLO-TOS Ocean Sciences Meeting, New Orleans LA, February 2016.
  5. M. A. Mohr, Quantitative Analysis of Periodic Breathing and Very Long Apnea in Preterm Infants, dissertation, 2015.
  6. Karen Fairchild, Mary Mohr, Alix Paget-Brown, Christa Tabacaru, Douglas Lake, John Delos, Joseph Randall Moorman, John Kattwinkel. Clinical associations of immature breathing in preterm infants: part 1-central apnea. Pediatric Research 80, 21-27 (9th March 2016) doi:10.1038/pr.2016.43
  7. Manisha Patel, Mary Mohr, Douglas Lake, John Delos, J. Randall Moorman, Robert A. Sinkin, John Kattwinkel, Karen Fairchild. Clinical associations with immature breathing in preterm infants: part 2-periodic breathing. Pediatric Research 80, 28-34 (22nd March 2016) doi:10.1038/pr.2016.58
  8. Plante, M.; Richter, A.W.; Throckmorton, N.A. The Zero Lower Bound and Endogenous Uncertainty. Economic Journal, forthcoming. Author's version.
  9. Tan, J.A., Rose, J.T., Cassidy, J.P., Rohatgi, S.K. and Wustholz, K.L. Dispersive Electron-Transfer Kinetics of Rhodamines on TiO2: Impact of Structure and Driving Force on Single-Molecule Photophysics. J. Phys. Chem. C. 2016, 120 (37), 20710 - 20720.
  10. Ye, F., Zhang, Y., Friedrichs, M., Wang, H.V., Irby, I., Shen, J., and Z. Wang (2016) A 3D, cross-scale, baroclinic model with implicit vertical transport for the Upper Chesapeake Bay and its tributaries, Ocean Modelling, vol. 107, 82-96. 10.1016/j.ocemod.2016.10.004.
  11. Mingpu Qin, Hao Shi, and Shiwei Zhang, Coupling quantum Monte Carlo and independent-particle calculations: Self-consistent constraint for the sign problem based on the density or the density matrix. Phys Rev B 94, 235119 (2016) https://doi.org/10.1103/PhysRevB.94.235119
  12. E. Vitali, H. Shi, M. Qin, and S. Zhang, Computation of dynamical correlation functions for many-fermion systems with auxiliary-field quantum Monte Carlo. Phys Rev B 94, 085140 (2016) https://doi.org/10.1103/PhysRevB.94.085140
  13. Mingpu Qin, Hao Shi, and Shiwei Zhang, Benchmark study of the two-dimensional Hubbard model with auxiliary-field quantum Monte Carlo method. Phys Rev B 94, 085103 (2016) https://doi.org/10.1103/PhysRevB.94.085103
2015
  1. Purwanto, W.; Zhang, S.; Krakauer, H. An Auxiliary-Field Quantum Monte Carlo Study of the Chromium Dimer. J. Chem. Phys. 2015, 142 (6), 064302.
  2. M. Komelj and H. Krakauer. Electron-phonon coupling and exchange-correlation effects in superconducting H3S under high pressure. Phys. Rev. B. 92 (20), 205125 (2015). DOI:10.1103/PhysRevB.92.205125, November 2015.
  3. Moriarty, J.M., Harris, C.K., and Hadfield, M. G. (2015).  Event-to-seasonal sediment dispersal on the Waipaoa River Shelf, New Zealand: A numerical modeling study.  Continental Shelf Research, 10:108-123. DOI:10.1016/j.csr.2015.10.005.
  4. Saporito, Salvatore and David Van Riper. Do Irregularly Shaped School Attendance Zones Contribute to Racial Segregation or Integration? Social Currents, doi:10.1177/2329496515604637, September 2015.
  5. F. Ma, W. Purwanto, S. Zhang, and H. Krakauer. Quantum Monte Carlo Calculations in Solids with Downfolded Hamiltonians. Phys. Rev. Lett. 2015, 114 (22), 226401, doi:10.1103/PhysRevLett.114.226401, June 2015.
  6. G. Casale, V. De Nitto-Persone, and E. Smirni. QRF: an Optimization-Based Framework for Evaluating Complex Stochastic Networks. ACM TOMACS. Author's version.
  7. P. Rosenberg, S. Chiesa and S. Zhang. FFLO order in ultra-cold atoms in three-dimensional optical lattices. J. Phys.: Condens. Matter 27 225601, doi:10.1088/0953-8984/27/22/225601, June 2015.
  8. J. P. F. LeBlanc, Andrey E. Antipov, Federico Becca, Ireneusz W. Bulik, Garnet Kin-Lic Chan, Chia-Min Chung,Youjin Deng, Michel Ferrero, Thomas M. Henderson, Carlos A. Jiménez-Hoyos, E. Kozik, Xuan-Wen Liu, Andrew J. Millis, N. V. Prokof’ev, Mingpu Qin, Gustavo E. Scuseria, Hao Shi, B. V. Svistunov, Luca F. Tocchio, I. S. Tupitsyn, Steven R. White, Shiwei Zhang, Bo-Xiao Zheng, Zhenyue Zhu, and Emanuel Gull (Simons Collaboration on the Many-Electron Problem). Solutions of the Two-Dimensional Hubbard Model: Benchmarks and Results from a Wide Range of Numerical Algorithms. Physical Review X 5, 041041 (2015).  https://doi.org/10.1103/PhysRevX.5.041041