Publications and presentations citing W&M HPC resources

2018
  • Kaufman, D. E., Friedrichs, M. A. M., Hemmings, J. C. P., and Smith Jr., W. O.: Assimilating bio-optical glider data during a phytoplankton bloom in the southern Ross Sea, Biogeosciences, 15, 73-90, https://doi.org/10.5194/bg-15-73-2018, (2018). 
  • H. Wang, F. Luo, M. Ibrahim, O. Kayiran, A. Jog. Efficient and Fair Multi-programming in GPUs via Effective Bandwidth Management. Proceedings of the 24th IEEE Symposium on
    High-Performance Computer Architecture (HPCA), Vienna, Austriahttp://adwaitjog.github.io/docs/pdf/pbs-hpca18.pdf, Feb 2018.
  • G. Kadam, D. Zhang, A. Jog. RCoal: Mitigating GPU Timing Attack via Subwarp-based Randomized Coalescing TechniquesProceedings of 24th IEEE Symposium on High-Performance Computer Architecture (HPCA), Vienna, Austria, http://adwaitjog.github.io/docs/pdf/rcoal-hpca18.pdf, Feb 2018.
  • Du, J., Shen, J., Zhang, Y. J., Ye, F., Liu, Z., Wang, Z., Wang, Y. P., Yu, X., Sisson, M., Wang, H. V. (2018). Tidal response to sea-level rise in different types of estuaries: The importance of length, bathymetry, and geometry. Geophysical Research Letters, 45. https://doi.org/10.1002/2017GL075963
2017
  • St-Laurent, P., M.A.M Friedrichs, R.G. Najjar, D.K. Martins, M. Herrmann, S.K. Miller and J. Wilkin. Impacts of atmospheric nitrogen deposition on surface waters of the western North Atlantic mitigated by multiple feedbacks J. Geophys. Res. Oceans, vol. 122, doi:10.1002/2017jc013072, VIMS Contribution No. 3665.
  • BenYishay, A., Heuser, S., Runfola, D.M., Trichler, R. 2017. Indigenous land rights and deforestation: Evidence from the Brazilian Amazon. Journal of Environmental Economics and Management. https://doi.org/10.1016/j.jeem.2017.07.008
  • Zhao, J., Kemper, P., Runfola, D., 2017. Quantifying Heterogeneous Causal Treatment Effects in World Bank Development Finance Projects. Data Mining and Knowledge Discovery (ECML PKDD). http://ecmlpkdd2017.ijs.si/papers/paperID507.pdf
  • Zhao, J., Runfola, D., Kemper, P. 2017. Simulation Study in Quantifying Heterogeneous Causal Effects. WSC Proceedings. Available online at:                                                http://informs-sim.org/wsc17papers/.
  • Runfola, D., BenYishay,  A., Tanner, J., Buchanan, G., Nagol, J.,  Leu, M., Goodman, M.,Trichler, R., and Marty, R. 2017. A Top-Down Approach to Estimating Spatially Heterogeneous Impacts of Development Aid on Vegetative Carbon Sequestration. Sustainability 9(3), 409. doi:10.3390/su9030409. http://www.mdpi.com/2071-1050/9/3/409
  • Tan, J.A., Garakyaraghi, S., Tagami, K.A., Frano, K.A., Crockett, H.M., Ogata, A.F., Patterson, J.D. and Wustholz, K.L. Contributions from Excited-State Proton and Electron Transfer to the Blinking and Photobleaching Dynamics of Alizarin and Purpurin. J. Phys. Chem. C. 2017, 121 (1), 97 - 106. Article ASAP DOI: 10.1021/acs.jpcc.6b09818
  • Santos, B.S., Kaplan, D.M., Friedrichs, M.A.M., Manning, J.P., Mansfield, K.L., Rose, S.A., Barco, S.G. Identifying locations of and mechanisms for sea turtle mortality from stranding data using ocean drift models. Oral presentation. 31st Annual Meeting of the Tidewater Chapter of the American Fisheries Society, Virginia Beach, VA. 10 March 2017.
  • Santos, B.S., Kaplan, D.M., Friedrichs, M.A.M., Barco, S.G., Mansfield, K.L., Manning, J.P. Consequences of drift and decay of sea turtle carcasses for the estimation of turtle mortality locations from stranding data in the Chesapeake Bay. Oral presentation. International Sea Turtle Society 37th Annual Symposium on Sea Turtle Biology and Conservations, Las Vegas, NV. 19 April 2017.
  • Richter, A.W., Throckmorton, N.A. A New Way to Quantify the Effect of Uncertainty. Federal Reserve Bank of Dallas Working Paper 1705. May 2017.
  • Moriarty, J. M., Harris, C. K., Rabouille, C., Fennel, K., Friedrichs, M.A.M, and Xu, K. (2017). The Roles of Resuspension, Diffusion and Biogeochemical Processes on Oxygen Dynamics Offshore of the Rhone River, France: A Numerical Modeling Study. Biogeosciences, 14, p. 1919-1946.
  • Kaufman, D. E., M. A. M. Friedrichs, W. O. Smith Jr., E. E. Hofmann, M. S. Dinniman, and J. C. P. Hemmings (2017), Climate change impacts on southern Ross Sea phytoplankton composition, productivity, and export. J. Geophys. Res. Oceans, 122, 2339–2359, doi:10.1002/2016JC012514.
  • Kaufman, D.E. (2017). Using high-resolution glider data and biogeochemical modeling to investigate phytoplankton variability in the Ross Sea. Doctoral thesis. Virginia Institute of Marine Science, College of William and Mary.
  • M. Motta and S. Zhang, Computation of Ground-State Properties in Molecular Systems: Back-Propagation with Auxiliary-Field Quantum Monte Carlo. J. Chem. Theory Comput., 2017, 13 (11), pp 5367–5378. doi: 10.1021/acs.jctc.7b00730.
  • Mario Motta, David M. Ceperley, Garnet Kin-Lic Chan, John A. Gomez, Emanuel Gull, Sheng Guo, Carlos A. Jiménez-Hoyos, Tran Nguyen Lan, Jia Li, Fengjie Ma, Andrew J. Millis, Nikolay V. Prokof’ev, Ushnish Ray, Gustavo E. Scuseria, Sandro Sorella, Edwin M. Stoudenmire, Qiming Sun, Igor S. Tupitsyn, Steven R. White, Dominika Zgid, and Shiwei Zhang (Simons Collaboration on the Many-Electron Problem).  Towards the Solution of the Many-Electron Problem in Real Materials: Equation of State of the Hydrogen Chain with State-of-the-Art Many-Body Methods. Phys. Rev. X 7, 031059 (2017).
  • Peter Rosenberg, Hao Shi, and Shiwei Zhang, Ultracold Atoms in a Square Lattice with Spin-Orbit Coupling: Charge Order, Superfluidity, and Topological Signatures. Phys. Rev. Lett. 119, 265301 (2017).
  • Ettore Vitai, Hao Shi, Mingpu Qin, and Shiwei Zhang. Response Functions for the Two-Dimensional Ultracold Fermi Gas: Dynamical BCS Theory and Beyond.  J Low Temp Phys (2017) 189: 312. https://doi.org/10.1007/s10909-017-1805-z

  • T. J. Huffman, C. Hendriks, E. J. Walter, Joonseok Yoon, Honglyoul Ju, R. Smith, G. L. Carr, H. Krakauer, and M. M. Qazilbash. Insulating phases of vanadium dioxide are Mott-Hubbard insulators. Phys. Rev. B 95, 075125 (2017).
  • Fengjie Ma, Shiwei Zhang, and Henry Krakauer. Auxiliary-field quantum Monte Carlo calculations with multiple-projector pseudopotentials. Phys. Rev. B 95, 165103 (2017).
2016
  • Santos B.S., Barco S.G., Mansfield K.L., Friedrichs M.A.M, Manning J.P., Upite C., Kaplan D.M. Identifying locations of and mechanisms for sea turtle mortality from stranding data using ocean drift models. Poster presentation. International Sea Turtle Society 36th Annual Symposium on Sea Turtle Biology and Conservation, Lima, Peru. 26 March 2016.
  • Zhang, Y., Ye, F., Stanev, E.V., Grashorn, S. (2016). Seamless cross-scale modeling with SCHISM, Ocean Modelling, 102, 64-81. doi:10.1016/j.ocemod.2016.05.002
  • Zhang, Y., Priest, G.R., Allan, J., Stimely, L. (in press) Benchmarking an unstructured-grid model for tsunami current modeling, Pure and Applied Geophysics.
  • Zhang, Y., Stanev, E.V. and S. Grashorn (2016) Unstructured-grid model for the North Sea and Baltic Sea: validation against observations, Ocean Modelling, 97, 91-108.
  • Najjar, R., P. Sedwick, M. Mulholland, M.A.M. Friedrichs, A. Thompson, D. Martins, P. Bernhardi, M. Herrmann, L. Price, B. Sohst, C. Sookhdeo, P. St-Laurent, B. Widner. Deposition of atmospheric nitrogen to coastal ecosystems (DANCE): A study in seasonally oligotrophic waters off the eastern U.S. AGU-ASLO-TOS Ocean Sciences Meeting, New Orleans LA, February 2016.
  • M. A. Mohr, Quantitative Analysis of Periodic Breathing and Very Long Apnea in Preterm Infants, dissertation, 2015.
  • Karen Fairchild, Mary Mohr, Alix Paget-Brown, Christa Tabacaru, Douglas Lake, John Delos, Joseph Randall Moorman, John Kattwinkel. Clinical associations of immature breathing in preterm infants: part 1-central apnea. Pediatric Research 80, 21-27 (9th March 2016) doi:10.1038/pr.2016.43
  • Manisha Patel, Mary Mohr, Douglas Lake, John Delos, J. Randall Moorman, Robert A. Sinkin, John Kattwinkel, Karen Fairchild. Clinical associations with immature breathing in preterm infants: part 2-periodic breathing. Pediatric Research 80, 28-34 (22nd March 2016) doi:10.1038/pr.2016.58
  • Plante, M.; Richter, A.W.; Throckmorton, N.A. The Zero Lower Bound and Endogenous Uncertainty. Economic Journal, forthcoming. Author's version.
  • Tan, J.A., Rose, J.T., Cassidy, J.P., Rohatgi, S.K. and Wustholz, K.L. Dispersive Electron-Transfer Kinetics of Rhodamines on TiO2: Impact of Structure and Driving Force on Single-Molecule Photophysics. J. Phys. Chem. C. 2016, 120 (37), 20710 - 20720.
  • Ye, F., Zhang, Y., Friedrichs, M., Wang, H.V., Irby, I., Shen, J., and Z. Wang (2016) A 3D, cross-scale, baroclinic model with implicit vertical transport for the Upper Chesapeake Bay and its tributaries, Ocean Modelling, vol. 107, 82-96. 10.1016/j.ocemod.2016.10.004.
  • Priest, G.R., Witter, R.C., Zhang, Y., Goldfinger, C., and Wang, K. (in press) New constraints on coseismic slip during southern Cascadia subduction zone earthquakes over the past 4600 years implied by tsunami deposits and marine turbidites, Natural Hazards. DOI: 10.1007/s11069-017-2864-9
2015
  • Purwanto, W.; Zhang, S.; Krakauer, H. An Auxiliary-Field Quantum Monte Carlo Study of the Chromium Dimer. J. Chem. Phys. 2015, 142 (6), 064302.
  • M. Komelj and H. Krakauer. Electron-phonon coupling and exchange-correlation effects in superconducting H3S under high pressure. Phys. Rev. B. 92 (20), 205125 (2015). DOI:10.1103/PhysRevB.92.205125, November 2015.
  • Moriarty, J.M., Harris, C.K., and Hadfield, M. G. (2015).  Event-to-seasonal sediment dispersal on the Waipaoa River Shelf, New Zealand: A numerical modeling studyContinental Shelf Research, 10:108-123. DOI:10.1016/j.csr.2015.10.005.
  • Saporito, Salvatore and David Van Riper. Do Irregularly Shaped School Attendance Zones Contribute to Racial Segregation or Integration? Social Currents, doi:10.1177/2329496515604637, September 2015.
  • F. Ma, W. Purwanto, S. Zhang, and H. Krakauer. Quantum Monte Carlo Calculations in Solids with Downfolded Hamiltonians. Phys. Rev. Lett. 2015, 114 (22), 226401, doi:10.1103/PhysRevLett.114.226401, June 2015.
  • G. Casale, V. De Nitto-Persone, and E. Smirni. QRF: an Optimization-Based Framework for Evaluating Complex Stochastic Networks. ACM TOMACS. Author's version.
  • P. Rosenberg, S. Chiesa and S. Zhang. FFLO order in ultra-cold atoms in three-dimensional optical lattices. J. Phys.: Condens. Matter 27 225601, doi:10.1088/0953-8984/27/22/225601, June 2015.